PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.6K1VA

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 395aa MW: 43147.2 Da PI: 7.5021

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.6K1VA	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	207	254	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Araip.6K1VA 207 SHSLAERVRREKISERMKFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 254 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-17	201	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.63E-11	201	258	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-17	203	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.586	203	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-7	207	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-9	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MLHCLNSNAS GSEMTVLERQ RATIKWQHNN NHHQGYSSSS SPSPSSSSSI SLVQVQSSSP 60 ACLAAGAWPK LDNNFLMGFT SSPSSGFPLP PPPPPTTSAA SFDLNSAISR TSSCPLPSLA 120 EGKETTTPNN KRKTDKFHNT KVVASDNDNK DKRVKVAAPN DSATVGKKGT QDCGDNSNKD 180 NSKVSEVQNQ KPDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCNKITGKA 240 GMLDEIINYV QSLQRQVEFL SMKLAAVNPR LDFNMDDLFT REVFPACAAS FPAIEMSPNM 300 ANPASYLHFN SSQQIDAGIN PQDISLRRTI SAPVSAPETF LDSSCFTQTL PSSTWEGDFQ 360 NLYSVAFDQA RAASFPSQLF TGLLEPSNLK MEMEM

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MLHCLNSNAS GSEMTVLERQ RATIKWQHNN NHHQGYSSSS SPSPSSSSSI SLVQVQSSSP  60
ACLAAGAWPK LDNNFLMGFT SSPSSGFPLP PPPPPTTSAA SFDLNSAISR TSSCPLPSLA  120
EGKETTTPNN KRKTDKFHNT KVVASDNDNK DKRVKVAAPN DSATVGKKGT QDCGDNSNKD  180
NSKVSEVQNQ KPDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCNKITGKA  240
GMLDEIINYV QSLQRQVEFL SMKLAAVNPR LDFNMDDLFT REVFPACAAS FPAIEMSPNM  300
ANPASYLHFN SSQQIDAGIN PQDISLRRTI SAPVSAPETF LDSSCFTQTL PSSTWEGDFQ  360
NLYSVAFDQA RAASFPSQLF TGLLEPSNLK MEMEM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016167250.1	0.0	PREDICTED: transcription factor bHLH63-like
TrEMBL	G7J737	1e-136	G7J737_MEDTR; BHLH transcription factor
TrEMBL	I3SJD7	1e-136	I3SJD7_MEDTR; Uncharacterized protein
STRING	GLYMA11G12450.3	1e-132	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3618	34	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	6e-63	cryptochrome-interacting basic-helix-loop-helix 1