![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.6K1VA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 395aa MW: 43147.2 Da PI: 7.5021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.3e-09 | 207 | 254 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Araip.6K1VA 207 SHSLAERVRREKISERMKFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 254 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.59E-17 | 201 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.63E-11 | 201 | 258 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.9E-17 | 203 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.586 | 203 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-7 | 207 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-9 | 209 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 395 aa Download sequence Send to blast |
MLHCLNSNAS GSEMTVLERQ RATIKWQHNN NHHQGYSSSS SPSPSSSSSI SLVQVQSSSP 60 ACLAAGAWPK LDNNFLMGFT SSPSSGFPLP PPPPPTTSAA SFDLNSAISR TSSCPLPSLA 120 EGKETTTPNN KRKTDKFHNT KVVASDNDNK DKRVKVAAPN DSATVGKKGT QDCGDNSNKD 180 NSKVSEVQNQ KPDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCNKITGKA 240 GMLDEIINYV QSLQRQVEFL SMKLAAVNPR LDFNMDDLFT REVFPACAAS FPAIEMSPNM 300 ANPASYLHFN SSQQIDAGIN PQDISLRRTI SAPVSAPETF LDSSCFTQTL PSSTWEGDFQ 360 NLYSVAFDQA RAASFPSQLF TGLLEPSNLK MEMEM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016167250.1 | 0.0 | PREDICTED: transcription factor bHLH63-like | ||||
TrEMBL | G7J737 | 1e-136 | G7J737_MEDTR; BHLH transcription factor | ||||
TrEMBL | I3SJD7 | 1e-136 | I3SJD7_MEDTR; Uncharacterized protein | ||||
STRING | GLYMA11G12450.3 | 1e-132 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34530.1 | 6e-63 | cryptochrome-interacting basic-helix-loop-helix 1 |